Characterization of Rice (Oryza sativa L.) Roots Versus Root Pulling Resistance as Selection Indices for Draught Tolerance

A technique described as Root Pulling Resistance (RPR) was used to evaluate genotypic differences in root growth and development of 50 rice germplasm accessions and cultivars. Several root characteristics in rice are associated with drought tolerance and avoidance capability of plants. The RPR measurements showed a significant positive correlation with maximum root length (r=0.69), root thickness (r=0.75), branching number (r=0.75), and root dry weight (r= 0.82). Rice genotypes that had a high RPR value were identified as having longer, thicker, and denser root systems. The data indicated that high RPR measurements are strongly correlated with greater root penetration. Munji Sufaid Pak, IR52 (IR5853-1 18-5) and Saunfia or Mabla Pak 329 had a significantly greater root length, root thickness, root number, root branching and dry weight as compared to IR 36. Also, there was no correlation between plant height and RPR. Furthermore, the data demonstrated that the RPR technique is ideal for selecting superior root systems and potential drought tolerant rice germplasm and cultivars

Entropic transport - A test bed for the Fick-Jacobs approximation

Biased diffusive transport of Brownian particles through irregularly shaped, narrow confining quasi-one-dimensional structures is investigated. The complexity of the higher dimensional diffusive dynamics is reduced by means of the so-called Fick-Jacobs approximation, yielding an effective one-dimensional stochastic dynamics. Accordingly, the elimination of transverse, equilibrated degrees of freedom stemming from geometrical confinements and/or bottlenecks cause entropic potential barriers which the particles have to overcome when moving forward noisily. The applicability and the validity of the reduced kinetic description is tested by comparing the approximation with Brownian dynamics simulations in full configuration space. This non-equilibrium transport in such quasi-one-dimensional irregular structures implies for moderate-to-strong bias a characteristic violation of the Sutherland-Einstein fluctuation-dissipation relation.Comment: 15 pages, 6 figures ; Phil. Trans. R. Soc. A (2009), in pres

Diffusion of multiple species with excluded-volume effects

Stochastic models of diffusion with excluded-volume effects are used to model many biological and physical systems at a discrete level. The average properties of the population may be described by a continuum model based on partial differential equations. In this paper we consider multiple interacting subpopulations/species and study how the inter-species competition emerges at the population level. Each individual is described as a finite-size hard core interacting particle undergoing Brownian motion. The link between the discrete stochastic equations of motion and the continuum model is considered systematically using the method of matched asymptotic expansions. The system for two species leads to a nonlinear cross-diffusion system for each subpopulation, which captures the enhancement of the effective diffusion rate due to excluded-volume interactions between particles of the same species, and the diminishment due to particles of the other species. This model can explain two alternative notions of the diffusion coefficient that are often confounded, namely collective diffusion and self-diffusion. Simulations of the discrete system show good agreement with the analytic results

Lateral vibration effects in atomic-scale friction

The influence of lateral vibrations on the stick-slip motion of a nanotip elastically pulled on a flat crystal surface is studied by atomic force microscopy (AFM) measurements on a NaCl(001) surface in ultra-high vacuum. The slippage of the nanotip across the crystal lattice is anticipated at increasing driving amplitude, similarly to what is observed in presence of normal vibrations. This lowers the average friction force, as explained by the Prandtl-Tomlinson model with lateral vibrations superimposed at finite temperature. Nevertheless, the peak values of the lateral force, and the total energy losses, are expected to increase with the excitation amplitude, which may limit the practical relevance of this effect.Comment: To appear in Applied Physics Letter

Mechanical Unfolding of a Simple Model Protein Goes Beyond the Reach of One-Dimensional Descriptions

We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurational space of the system. Using transition path theory we also provide a quantitative description of the unfolding pathways followed by the system. Our study shows a complex dynamical scenario. In particular, we see that the usual one-dimensional picture: free-energy vs end-to-end distance representation, gives a misleading description of the process. Unfolding can occur following different pathways and configurations which seem to play a central role in one-dimensional pictures are not the intermediate states of the unfolding dynamics.Comment: 10 pages, 6 figure

Screening Rice (Oryza Sativa L.) Genotypes for Drought Tolerance Under Field Conditions

We evaluated the root pulling resistance (RPR) technique developed at the International Rice Research Institute (IRRI) for transplanted rice (Oryza sativa L.) to determine its applicability for assessing the drought tolerance of direct seeded rice. Experiments were conducted in 1988 and 1989 at the University of Arkansas at Pine Bluff Agricultural Research Farm. Fifty genotypes from four countries were grown with and without irrigation. The genotypes identified as drought tolerant germplasm by the RPR method in both years were significantly correlated. In both 1988 and 1 989, RPR was directly related to maximum root length, root number, and root dry weight. Root dry weight (RWT) had the highest correlation with RPR in both 1988 (r= 0.82 ** ) and 1989 (r=0.46 * * ). Cultivars with the greatest root lengths and root dry weights had the highest root pulling resistances

Deterministic Brownian motion generated from differential delay equations

This paper addresses the question of how Brownian-like motion can arise from the solution of a deterministic differential delay equation. To study this we analytically study the bifurcation properties of an apparently simple differential delay equation and then numerically investigate the probabilistic properties of chaotic solutions of the same equation. Our results show that solutions of the deterministic equation with randomly selected initial conditions display a Gaussian-like density for long time, but the densities are supported on an interval of finite measure. Using these chaotic solutions as velocities, we are able to produce Brownian-like motions, which show statistical properties akin to those of a classical Brownian motion over both short and long time scales. Several conjectures are formulated for the probabilistic properties of the solution of the differential delay equation. Numerical studies suggest that these conjectures could be "universal" for similar types of "chaotic" dynamics, but we have been unable to prove this.Comment: 15 pages, 13 figure

Equilibrium properties of a Josephson junction ladder with screening effects

In this paper we calculate the ground state phase diagram of a Josephson Junction ladder when screening field effects are taken into account. We study the ground state configuration as a function of the external field, the penetration depth and the anisotropy of the ladder, using different approximations to the calculation of the induced fields. A series of tongues, characterized by the vortex density $\omega$, is obtained. The vortex density of the ground state, as a function of the external field, is a Devil's staircase, with a plateau for every rational value of $\omega$. The width of each of these steps depends strongly on the approximation made when calculating the inductance effect: if the self-inductance matrix is considered, the $\omega=0$ phase tends to occupy all the diagram as the penetration depth decreases. If, instead, the whole inductance matrix is considered, the width of any step tends to a non-zero value in the limit of very low penetration depth. We have also analyzed the stability of some simple metastable phases: screening fields are shown to enlarge their stability range.Comment: 16 pp, RevTex. Figures available upon request at [email protected] To be published in Physical Review B (01-Dec-96

Biased random walks on complex networks: the role of local navigation rules

We study the biased random walk process in random uncorrelated networks with arbitrary degree distributions. In our model, the bias is defined by the preferential transition probability, which, in recent years, has been commonly used to study efficiency of different routing protocols in communication networks. We derive exact expressions for the stationary occupation probability, and for the mean transit time between two nodes. The effect of the cyclic search on transit times is also explored. Results presented in this paper give the basis for theoretical treatment of the transport-related problems on complex networks, including quantitative estimation of the critical value of the packet generation rate.Comment: 5 pages (Phys. Rev style), 3 Figure

Ratchet potential for fluxons in Josephson-Junction arrays

We propose a simple configuration of a one-dimensional parallel array of Josephson junctions in which the pinning potential for trapped fluxons lacks inversion symmetry (ratchet potential). This sytem can be modelised by a set of non-linear pendula with alternating lengths and harmonic couplings. We show, by molecular dynamics simulations, that fluxons behave as single particles in which the predictions for overdamped thermal ratchet can be easily verified.Comment: 7 pages, 8 figure